Description
The extent (either rows or columns) of one or more of the rasters in the Input Multidimensional Raster Layer does not match the extent of the multidimensional raster from its layer properties.
Solution
The multidimensional raster layer can be exported to a multidimensional raster file, such as a .crf file, using the Copy Raster tool. This will resolve the extent issue and allow you to rerun the tool using the resulting multidimensional raster file. Optionally, set the Processing Extent environment to an option other than Default or the extent of the multidimensional raster layer to solve this problem.